Image Analysis
Both locations provide access to powerful computers and image analysis software:
Image Analysis Software Used at the Core Facility
Description | LM | HCA | EM | 3D | Statistic | Open Source | Info | |
Fiji is an image processing package | (via 3D Viewer Plugin) |
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Ilastik is an interactive learning & segmentation toolkit | View | |||||||
MIB is a GUI tool for advanced manipulation with microscopy images and segmentation | (Export Amira/Imaris/IMOD 3D model) |
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IMOD is a set of image processing, modeling and display programs used for tomographic reconstruction and for 3D reconstruction of EM serial sections and optical sections. | View | |||||||
CellProfiler is free open-source software designed to enable biologists without training in computer vision or programming to quantitatively measure phenotypes from thousands of images automatically. | View | |||||||
Volocity® 3D Image Analysis Software provides tools to visualize, analyze and validate 3D fluorescence images from a wide range of confocal microscopy, widefield and HCS systems. | View | |||||||
Imaris® is a software module that delivers all the necessary functionality for data visualization, analysis, segmentation and interpretation of 3D and 4D microscopy datasets | View | |||||||
IN Cell Investigator® offers a flexible and comprehensive solution for automated high-content analysis of live and fixed cell assays. | View | |||||||
Zen® is the single user interface you will see on all light microscopy imaging systems from Carl Zeiss | View | |||||||
Analyze It® transform Excel® into a world-class statistical software package. | View |