Image Analysis

Both locations provide access to powerful computers and image analysis software:

• UGent Image Analysis
• KU Leuven Image Analysis

Image Analysis Software Used at the Core Facility

	Description	LM	HCA	EM	3D	Statistic	Open Source	Info
	Fiji is an image processing package				(via 3D Viewer Plugin)			View
	Ilastik is an interactive learning & segmentation toolkit							View
	MIB is a GUI tool for advanced manipulation with microscopy images and segmentation				(Export Amira/Imaris/IMOD 3D model)			View
	IMOD is a set of image processing, modeling and display programs used for tomographic reconstruction and for 3D reconstruction of EM serial sections and optical sections.							View
	CellProfiler is free open-source software designed to enable biologists without training in computer vision or programming to quantitatively measure phenotypes from thousands of images automatically.							View
	Volocity® 3D Image Analysis Software provides tools to visualize, analyze and validate 3D fluorescence images from a wide range of confocal microscopy, widefield and HCS systems.							View
	Imaris® is a software module that delivers all the necessary functionality for data visualization, analysis, segmentation and interpretation of 3D and 4D microscopy datasets							View
	IN Cell Investigator® offers a flexible and comprehensive solution for automated high-content analysis of live and fixed cell assays.							View
	Zen® is the single user interface you will see on all light microscopy imaging systems from Carl Zeiss							View
	Analyze It® transform Excel® into a world-class statistical software package.							View