Both locations provide access to powerful computers and image analysis software:
Image Analysis Software Used at the Core Facility
|Fiji is an image processing package
(via 3D Viewer Plugin)
|Ilastik is an interactive learning & segmentation toolkit
|MIB is a GUI tool for advanced manipulation with microscopy images and segmentation
(Export Amira/Imaris/IMOD 3D model)
|IMOD is a set of image processing, modeling and display programs used for tomographic reconstruction and for 3D reconstruction of EM serial sections and optical sections.
|CellProfiler is free open-source software designed to enable biologists without training in computer vision or programming to quantitatively measure phenotypes from thousands of images automatically.
|Volocity® 3D Image Analysis Software provides tools to visualize, analyze and validate 3D fluorescence images from a wide range of confocal microscopy, widefield and HCS systems.
|Imaris® is a software module that delivers all the necessary functionality for data visualization, analysis, segmentation and interpretation of 3D and 4D microscopy datasets
|IN Cell Investigator® offers a flexible and comprehensive solution for automated high-content analysis of live and fixed cell assays.
|Zen® is the single user interface you will see on all light microscopy imaging systems from Carl Zeiss
|Analyze It® transform Excel® into a world-class statistical software package.